The Actinobacteriophage Database

Mycobacterium phage Murucutumbu

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Detailed Information for Phage Murucutumbu
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Lyanne M. Nieves
Year Found	2011
Location Found	Gurabo, PR USA
Finding Institution	University of Puerto Rico at Cayey
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	18.275353 N, 65.957531 W Map
Discovery Notes	Sample taken from front of house. The day was sunny but the soil was humid. The sample was taken by digging a few centimeters.
Naming Notes	I just found it sort of musical.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Jan 29, 2013
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Ion Torrent Sequencing
Approximate Shotgun Coverage	200
Sanger Finishing Reactions	15
Genome length (bp)	60609
Character of genome ends	3' Sticky Overhang
Overhang Length	11 bases
Overhang Sequence	CTCGTAGGCAT
GC Content	66.7%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	K
Subcluster	K1
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View ActinUp (K1) Adephagia (K1) Adonis (K1) Ageofdapage (K1) AlishaPH (K1) Amelie (K1) Anaya (K1) Angelica (K1) Apocalypse (K1) Asayake (K1) Atiba (K1) BaghaKamala (K1) BarrelRoll (K1) BEEST (K1) Beezoo (K1) Bella96 (K1) Belladonna (K1) BGlluviae (K1) Biglebops (K1) Blizzard (K1) Boiiii (K1) Capricorn (K1) CaseJules (K1) CheetoDust (K1) Chris (K1) CREW (K1) CrimD (K1) Curiosium (K1) Dalmuri (K1) Dartin (K1) Deby (K1) Devera (K1) Dole (K1) DrHayes (K1) Durfee (K1) Efra2 (K1) Emerson (K1) Enkosi (K1) Ganymede (K1) Geraldini (K1) Guanica15 (K1) HedwigODU (K1) Homura (K1) Hyperbowlee (K1) Illumine (K1) Inky (K1) Jarvi (K1) JAWS (K1) Jayhawk (K1) Jeckyll (K1) Joy99 (K1) KiSi (K1) LastHope (K1) LaterM (K1) LeMond (K1) LilPharaoh (K1) LindNT (K1) Llorens (K1) Lunahalos (K1) MarkPhew (K1) McMater (K1) Mdavu (K1) MeaningOfLife (K1) Megsy (K1) Murucutumbu (K1) Mynx (K1) Nibb (K1) Nikao (K1) Niklas (K1) Nutello (K1) Oscar (K1) Padfoot (K1) Padpat (K1) Peanam (K1) Peel (K1) Piatt (K1) Pokerus (K1) Prithvi (K1) QuincyRose (K1) Ramen (K1) Rapunzel97 (K1) Richo (K1) Rosmarinus (K1) SamuelLPlaqson (K1) Scarlett (K1) SgtBeansprout (K1) Shaobing (K1) ShiaSurprise (K1) Slimphazie (K1) Spock (K1) Stinson (K1) Sulley (K1) Tachez (K1) TaiwanKao (K1) TingHuaYa (K1) TiniBug (K1) Tiri (K1) Topper (K1) Torres (K1) TreyKay (K1) TruffulaTree (K1) Twitch (K1) Urkel (K1) Validus (K1) Veliki (K1) YoureAdopted (K1) Yunkel11 (K1) Zabiza (K1) Zavala (K1) BoostSeason (K2) DismalFunk (K2) DismalStressor (K2) Findley (K2) Marcoliusprime (K2) Milly (K2) Mufasa (K2) Strobilo (K2) TM4 (K2) ZoeJ (K2) Hurricane (K3) Keshu (K3) MacnCheese (K3) Pharb (K3) Pixie (K3) ShedlockHolmes (K3) TBond007 (K3) TribleTrouble (K3) Chancellor (K4) Cheetobro (K4) Eponine (K4) Fionnbharth (K4) JF1 (K4) Juliette (K4) Malthus (K4) MissDaisy (K4) Mitti (K4) OmniCritical (K4) Patt (K4) Reptar3000 (K4) Ruthiejr (K4) SamScheppers (K4) Slarp (K4) Taquito (K4) Wintermute (K4) Agent47 (K5) AlleyCat (K5) Collard (K5) Dadosky (K5) Edugator (K5) Feyre (K5) Gengar (K5) Guillsminger (K5) Heftyboy (K5) InvictusManeo (K5) Kratio (K5) Larva (K5) Leston (K5) Miryou (K5) OkiRoe (K5) Omnicron (K5) Paola (K5) Psycho (K5) Rando14 (K5) SoSeph (K5) Thyatira (K5) Waterfoul (K5) Amgine (K6) Amohnition (K6) Bryler (K6) Cain (K6) DarthP (K6) Ekdilam (K6) Ellie (K6) Fefferhead (K6) Hammy (K6) Krueger (K6) Marshawn (K6) PhelpsODU (K6) Phrank (K6) Shadow1 (K6) SirPhilip (K6) Sunflower1121 (K6) Syra333 (K6) TClif (K6) Tierra (K6) Unicorn (K6) Ximenita (K6) Yuna (K6) Aminay (K7) Boilgate (K8)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	Plaques were turbid, 2 mm in diameter.
Morphotype	Siphoviridae
Number of Genes	95
Number of tRNAs	1
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Murucutumbu_1 Murucutumbu_2 Murucutumbu_3 Murucutumbu_4 Murucutumbu_5 — tRNA (gp5; tRNA-Trp (cca)) Murucutumbu_6 Murucutumbu_7 Murucutumbu_8 (terminase) Murucutumbu_9 (portal protein) Murucutumbu_10 (MuF-like minor capsid protein) Murucutumbu_11 Murucutumbu_12 (scaffolding protein) Murucutumbu_13 (major capsid protein) Murucutumbu_14 (head-to-tail adaptor) Murucutumbu_15 (head-to-tail stopper) Murucutumbu_16 Murucutumbu_17 (tail terminator) Murucutumbu_18 Murucutumbu_19 Murucutumbu_20 Murucutumbu_21 (tape measure protein) Murucutumbu_22 (minor tail protein) Murucutumbu_23 (minor tail protein) Murucutumbu_24 Murucutumbu_25 Murucutumbu_26 Murucutumbu_27 (minor tail protein) Murucutumbu_28 Murucutumbu_29 Murucutumbu_30 (lysin A) Murucutumbu_31 (lysin B) Murucutumbu_32 (holin) Murucutumbu_33 Murucutumbu_34 Murucutumbu_35 Murucutumbu_36 Murucutumbu_37 Murucutumbu_38 Murucutumbu_39 Murucutumbu_40 (queuine tRNA-ribosyltransferase) Murucutumbu_41 Murucutumbu_42 (tyrosine integrase) Murucutumbu_43 Murucutumbu_44 (immunity repressor) Murucutumbu_45 (helix-turn-helix DNA binding protein) Murucutumbu_46 (excise) Murucutumbu_47 Murucutumbu_48 Murucutumbu_49 Murucutumbu_50 (MerR-like helix-turn-helix DNA binding domain protein) Murucutumbu_51 (WhiB family transcription factor) Murucutumbu_52 Murucutumbu_53 Murucutumbu_54 Murucutumbu_55 Murucutumbu_56 Murucutumbu_57 Murucutumbu_58 (DnaE-like DNA polymerase III) Murucutumbu_59 Murucutumbu_60 Murucutumbu_61 Murucutumbu_62 Murucutumbu_63 Murucutumbu_64 Murucutumbu_65 Murucutumbu_66 Murucutumbu_67 Murucutumbu_68 (NrdH-like glutaredoxin) Murucutumbu_69 Murucutumbu_70 (DNA primase/helicase) Murucutumbu_71 (RusA-like resolvase) Murucutumbu_72 Murucutumbu_73 Murucutumbu_74 Murucutumbu_75 Murucutumbu_76 Murucutumbu_77 (SprT-like protease) Murucutumbu_78 Murucutumbu_79 Murucutumbu_80 Murucutumbu_81 Murucutumbu_82 Murucutumbu_83 Murucutumbu_84 Murucutumbu_85 (RtcB-like RNA ligase) Murucutumbu_86 Murucutumbu_87 Murucutumbu_88 Murucutumbu_89 Murucutumbu_90 Murucutumbu_91 Murucutumbu_92 Murucutumbu_93 Murucutumbu_94 Murucutumbu_95 Murucutumbu_96 (HNH endonuclease)
Submitted Annotation in DNA Master Format	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KM677211
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	29
Pitt Freezer Box Grid#	72

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