The Actinobacteriophage Database

Mycobacterium phage Omnicron

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Detailed Information for Phage Omnicron
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Tasha Baer
Year Found	2013
Location Found	Ft. Myers, FL USA
Finding Institution	Florida Gulf Coast University
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	26.459845 N, 81.768144 W Map
Discovery Notes	The soil sample was taken from dark sand in a patch of weeds next to a sign. It was top soil, about three inches down.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Dec 6, 2013
Sequencing Facility	Pittsburgh Bacteriophage Institute
Shotgun Sequencing Method	Illumina
Approximate Shotgun Coverage	3553
Genome length (bp)	61511
Character of genome ends	3' Sticky Overhang
Overhang Length	10 bases
Overhang Sequence	CTCGTGGCAT
GC Content	64.0%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	K
Subcluster	K5
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View ActinUp (K1) Adephagia (K1) Adonis (K1) Ageofdapage (K1) AlishaPH (K1) Amelie (K1) Anaya (K1) Angelica (K1) Apocalypse (K1) Asayake (K1) Atiba (K1) BaghaKamala (K1) BarrelRoll (K1) BEEST (K1) Beezoo (K1) Bella96 (K1) Belladonna (K1) BGlluviae (K1) Biglebops (K1) Blizzard (K1) Boiiii (K1) Capricorn (K1) CaseJules (K1) CheetoDust (K1) Chris (K1) Clipper (K1) CREW (K1) CrimD (K1) Curiosium (K1) Dalmuri (K1) Dartin (K1) Deby (K1) Devera (K1) Dole (K1) DrHayes (K1) Durfee (K1) Efra2 (K1) Emerson (K1) Enkosi (K1) Ganymede (K1) Geraldini (K1) Guanica15 (K1) HedwigODU (K1) Homura (K1) Hyperbowlee (K1) Illumine (K1) Inky (K1) Jarvi (K1) JAWS (K1) Jayhawk (K1) Jeckyll (K1) Joy99 (K1) KiSi (K1) LastHope (K1) LaterM (K1) LeMond (K1) LilPharaoh (K1) LindNT (K1) Llorens (K1) Lunahalos (K1) MacKat (K1) MarkPhew (K1) McMater (K1) Mdavu (K1) MeaningOfLife (K1) Megsy (K1) Murucutumbu (K1) Mynx (K1) Nibb (K1) Nikao (K1) Niklas (K1) Nutello (K1) Oscar (K1) Padfoot (K1) Padpat (K1) Peanam (K1) Peel (K1) Piatt (K1) Pokerus (K1) Prithvi (K1) QuincyRose (K1) Ramen (K1) Rapunzel97 (K1) Richo (K1) Rosmarinus (K1) SamuelLPlaqson (K1) Scarlett (K1) SgtBeansprout (K1) Shaobing (K1) ShiaSurprise (K1) Slimphazie (K1) Spock (K1) Stinson (K1) Sulley (K1) Tachez (K1) TaiwanKao (K1) TingHuaYa (K1) TiniBug (K1) Tiri (K1) Topper (K1) Torres (K1) TreyKay (K1) TruffulaTree (K1) Twitch (K1) Urkel (K1) Validus (K1) Veliki (K1) YoureAdopted (K1) Yunkel11 (K1) Zabiza (K1) Zavala (K1) BoostSeason (K2) DismalFunk (K2) DismalStressor (K2) Findley (K2) Marcoliusprime (K2) Milly (K2) Mufasa (K2) Strobilo (K2) TM4 (K2) ZoeJ (K2) Hurricane (K3) Keshu (K3) MacnCheese (K3) Pharb (K3) Pixie (K3) ShedlockHolmes (K3) TBond007 (K3) TribleTrouble (K3) Chancellor (K4) Cheetobro (K4) Eponine (K4) Fionnbharth (K4) JF1 (K4) Juliette (K4) Kraw (K4) Malthus (K4) MissDaisy (K4) Mitti (K4) OmniCritical (K4) Patt (K4) Reptar3000 (K4) Ruthiejr (K4) SamScheppers (K4) Slarp (K4) Taquito (K4) Wintermute (K4) Agent47 (K5) AlleyCat (K5) Collard (K5) Dadosky (K5) Edugator (K5) Feyre (K5) Gengar (K5) Guillsminger (K5) Heftyboy (K5) InvictusManeo (K5) Kratio (K5) Larva (K5) Leston (K5) Miryou (K5) OkiRoe (K5) Omnicron (K5) Paola (K5) Psycho (K5) Rando14 (K5) SoSeph (K5) Thyatira (K5) Waterfoul (K5) Amgine (K6) Amohnition (K6) Bryler (K6) Cain (K6) DarthP (K6) Ekdilam (K6) Ellie (K6) Fefferhead (K6) Hammy (K6) Krueger (K6) Marshawn (K6) November (K6) PhelpsODU (K6) Phrank (K6) Shadow1 (K6) SirPhilip (K6) Sunflower1121 (K6) Syra333 (K6) TClif (K6) Tierra (K6) Unicorn (K6) Ximenita (K6) Yuna (K6) Aminay (K7) Boilgate (K8)
Annotating Institution	Unknown or unassigned
Annotation Status	In GenBank
Plaque Notes	Omnicron is a phage that produces bulls-eye plaques that are 2 mm in diameter. The lytic portion is 1 mm in diameter.
Morphotype	Siphoviridae
Number of Genes	95
Number of tRNAs	1
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View Omnicron_1 Omnicron_2 Omnicron_3 Omnicron_4 — tRNA (tRNA-Trp (cca)) Omnicron_5 Omnicron_6 (terminase) Omnicron_7 (portal protein) Omnicron_8 (MuF-like minor capsid protein) Omnicron_9 Omnicron_10 (scaffolding protein) Omnicron_11 (major capsid protein) Omnicron_12 (head-to-tail adaptor) Omnicron_13 (head-to-tail stopper) Omnicron_14 Omnicron_15 (tail terminator) Omnicron_16 (major tail protein) Omnicron_18 (tail assembly chaperone) Omnicron_17 (tail assembly chaperone) Omnicron_19 (tape measure protein) Omnicron_20 (minor tail protein) Omnicron_21 (minor tail protein) Omnicron_22 (minor tail protein) Omnicron_23 Omnicron_24 (minor tail protein) Omnicron_25 Omnicron_26 (minor tail protein) Omnicron_27 Omnicron_28 Omnicron_29 Omnicron_30 (lysin A) Omnicron_31 (lysin B) Omnicron_32 (holin) Omnicron_33 Omnicron_34 Omnicron_35 Omnicron_36 Omnicron_37 Omnicron_38 Omnicron_39 Omnicron_40 Omnicron_41 (serine integrase) Omnicron_42 Omnicron_43 Omnicron_44 Omnicron_45 Omnicron_46 Omnicron_47 Omnicron_48 Omnicron_49 Omnicron_50 (DNA polymerase III sliding clamp) Omnicron_51 Omnicron_52 Omnicron_53 Omnicron_54 Omnicron_55 Omnicron_56 Omnicron_57 Omnicron_58 Omnicron_59 Omnicron_60 Omnicron_61 Omnicron_62 Omnicron_63 Omnicron_64 (NrdH-like glutaredoxin) Omnicron_65 Omnicron_66 Omnicron_67 (DNA primase/polymerase) Omnicron_68 (DNA helicase) Omnicron_69 (holliday junction resolvase) Omnicron_70 Omnicron_71 Omnicron_72 Omnicron_73 Omnicron_74 (DNA methylase) Omnicron_75 Omnicron_76 Omnicron_77 Omnicron_78 Omnicron_79 Omnicron_80 Omnicron_81 Omnicron_82 (RtcB-like RNA ligase) Omnicron_83 Omnicron_84 Omnicron_85 Omnicron_86 Omnicron_87 Omnicron_88 Omnicron_89 Omnicron_90 Omnicron_91 Omnicron_92 Omnicron_93 Omnicron_94 Omnicron_95 Omnicron_96 (HNH endonuclease)
Submitted Annotation in DNA Master Format	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	KM363596
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	4
Pitt Freezer Box Grid#	G1
Available Files
Plaque Picture	Download
Restriction Digest Picture	Download
EM Picture	Download

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