Mycobacterium phage Padpat
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Detailed Information for Phage Padpat
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByPatrick Dennis
Year Found2019
Location FoundAtlanta, GA United States
Finding InstitutionMorehouse College
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation TemperatureNot entered
GPS Coordinates33.75 N, 84.41 W Map
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedFeb 24, 2020
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina Sequencing
Approximate Shotgun Coverage212
Genome length (bp)60310
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCGTAGGCAT
GC Content66.6%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK1
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

Ageofdapage (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

Capricorn (K1)

CaseJules (K1)

CheetoDust (K1)

Chris (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Dartin (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jayhawk (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

Llorens (K1)

Lunahalos (K1)

MarkPhew (K1)

McMater (K1)

Mdavu (K1)

MeaningOfLife (K1)

Megsy (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

Richo (K1)

Rosmarinus (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TaiwanKao (K1)

TingHuaYa (K1)

TiniBug (K1)

Tiri (K1)

Topper (K1)

Torres (K1)

TreyKay (K1)

TruffulaTree (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zabiza (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Strobilo (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

MacnCheese (K3)

Pharb (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

TribleTrouble (K3)

Chancellor (K4)

Cheetobro (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

OmniCritical (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

Agent47 (K5)

AlleyCat (K5)

Collard (K5)

Dadosky (K5)

Edugator (K5)

Feyre (K5)

Gengar (K5)

Guillsminger (K5)

Heftyboy (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

Miryou (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

PhelpsODU (K6)

Phrank (K6)

Shadow1 (K6)

SirPhilip (K6)

Sunflower1121 (K6)

Syra333 (K6)

TClif (K6)

Tierra (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Boilgate (K8)

Annotating InstitutionUniversity of the Sciences (now St. Joseph's Univ)
Annotation StatusIn GenBank
MorphotypeSiphoviridae
Number of Genes100
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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Padpat_1

Padpat_2

Padpat_3

Padpat_4

Padpat_5 — tRNA
(tRNA-Trp(cca))

Padpat_6

Padpat_7

Padpat_8
(terminase)

Padpat_9
(portal protein)

Padpat_10
(capsid maturation protease)

Padpat_11

Padpat_12
(scaffolding protein)

Padpat_13
(major capsid protein)

Padpat_14
(head-to-tail adaptor)

Padpat_15
(head-to-tail stopper)

Padpat_16

Padpat_17
(tail terminator)

Padpat_18
(major tail protein)

Padpat_19
(tail assembly chaperone)

Padpat_20
(tail assembly chaperone)

Padpat_21
(tape measure protein)

Padpat_22
(minor tail protein)

Padpat_23
(minor tail protein)

Padpat_24

Padpat_25
(minor tail protein)

Padpat_26

Padpat_27
(minor tail protein)

Padpat_28
(minor tail protein)

Padpat_29

Padpat_30
(lysin A)

Padpat_31
(lysin B)

Padpat_32
(holin)

Padpat_33

Padpat_34

Padpat_35
(MRE11 double-stranded break endo/exonuclease)

Padpat_36

Padpat_37

Padpat_38

Padpat_39

Padpat_40

Padpat_41

Padpat_42
(tyrosine integrase)

Padpat_43

Padpat_44
(immunity repressor)

Padpat_45
(helix-turn-helix DNA binding domain protein)

Padpat_46
(excise)

Padpat_47

Padpat_48

Padpat_49

Padpat_50

Padpat_51
(MerR-like helix-turn-helix DNA binding domain protein)

Padpat_52
(WhiB family transcription factor)

Padpat_53

Padpat_54

Padpat_55

Padpat_56

Padpat_57

Padpat_58

Padpat_59
(DnaQ-like DNA polymerase III subunit)

Padpat_60

Padpat_61

Padpat_62

Padpat_63
(Cas4 family exonuclease)

Padpat_64

Padpat_65

Padpat_66

Padpat_67

Padpat_68

Padpat_69
(NrdH-like glutaredoxin)

Padpat_70

Padpat_71
(HNH endonuclease)

Padpat_72
(DNA primase/helicase)

Padpat_73

Padpat_74
(RusA-like resolvase)

Padpat_75

Padpat_76

Padpat_77

Padpat_78

Padpat_79

Padpat_80
(SprT-like protease)

Padpat_81

Padpat_82

Padpat_83

Padpat_84

Padpat_85

Padpat_86

Padpat_87

Padpat_88
(RtcB-like RNA ligase)

Padpat_89
(DNA binding protein)

Padpat_90

Padpat_91

Padpat_92

Padpat_93

Padpat_94

Padpat_95

Padpat_96
(HicB-like antitoxin)

Padpat_97
(HicA-like toxin)

Padpat_98

Padpat_99

Padpat_100

Padpat_101
(HNH endonuclease)

Submitted Minimal DNA Master FileDownload
Publication Info
Uploaded to GenBank?Yes
GenBank AccessionON724013
Refseq NumberNone yet
Archiving Info
Archiving status Archived
Pitt Freezer Box# 109
Pitt Freezer Box Grid# C2
Available Files
GenBank File for PhameratorDownload