The Actinobacteriophage Database

Mycobacterium phage SamScheppers

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Detailed Information for Phage SamScheppers
Discovery Information
Isolation Host	Mycobacterium smegmatis mc²155
Found By	Elizabeth Hamilton
Year Found	2013
Location Found	Canton, MO USA
Finding Institution	Culver-Stockton College
Program	Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?	Yes
Isolation Temperature	Not entered
GPS Coordinates	40.08 N, 91.51 W Map
Discovery Notes	Soil Sample damp 2 cm depth 32.2 degrees Celsius
Naming Notes	Named after my grandmother.
Sequencing Information
Sequencing Complete?	Yes
Date Sequencing Completed	Feb 27, 2014
Sequencing Facility	Virginia Commonwealth University Nucleic Acids Research Facilities
Shotgun Sequencing Method	454 Pyrosequencing
Approximate Shotgun Coverage	633
Sanger Finishing Reactions	6
Genome length (bp)	58351
Character of genome ends	3' Sticky Overhang
Overhang Length	11 bases
Overhang Sequence	CTCGCGGCCAT
GC Content	67.6%
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	K
Subcluster	K4
Cluster Life Cycle	Temperate
Other Cluster Members	Click to View ActinUp (K1) Adephagia (K1) Adonis (K1) Ageofdapage (K1) AlishaPH (K1) Amelie (K1) Anaya (K1) Angelica (K1) Apocalypse (K1) Asayake (K1) Atiba (K1) BaghaKamala (K1) BarrelRoll (K1) BEEST (K1) Beezoo (K1) Bella96 (K1) Belladonna (K1) BGlluviae (K1) Biglebops (K1) Blizzard (K1) Boiiii (K1) Capricorn (K1) CaseJules (K1) CheetoDust (K1) Chris (K1) CREW (K1) CrimD (K1) Curiosium (K1) Dalmuri (K1) Dartin (K1) Deby (K1) Devera (K1) Dole (K1) DrHayes (K1) Durfee (K1) Efra2 (K1) Emerson (K1) Enkosi (K1) Ganymede (K1) Geraldini (K1) Guanica15 (K1) HedwigODU (K1) Homura (K1) Hyperbowlee (K1) Illumine (K1) Inky (K1) Jarvi (K1) JAWS (K1) Jayhawk (K1) Jeckyll (K1) Joy99 (K1) KiSi (K1) LastHope (K1) LaterM (K1) LeMond (K1) LilPharaoh (K1) LindNT (K1) Llorens (K1) Lunahalos (K1) MarkPhew (K1) McMater (K1) Mdavu (K1) MeaningOfLife (K1) Megsy (K1) Murucutumbu (K1) Mynx (K1) Nibb (K1) Nikao (K1) Niklas (K1) Nutello (K1) Oscar (K1) Padfoot (K1) Padpat (K1) Peanam (K1) Peel (K1) Piatt (K1) Pokerus (K1) Prithvi (K1) QuincyRose (K1) Ramen (K1) Rapunzel97 (K1) Richo (K1) Rosmarinus (K1) SamuelLPlaqson (K1) Scarlett (K1) SgtBeansprout (K1) Shaobing (K1) ShiaSurprise (K1) Slimphazie (K1) Spock (K1) Stinson (K1) Sulley (K1) Tachez (K1) TaiwanKao (K1) TingHuaYa (K1) TiniBug (K1) Tiri (K1) Topper (K1) Torres (K1) TreyKay (K1) TruffulaTree (K1) Twitch (K1) Urkel (K1) Validus (K1) Veliki (K1) YoureAdopted (K1) Yunkel11 (K1) Zabiza (K1) Zavala (K1) BoostSeason (K2) DismalFunk (K2) DismalStressor (K2) Findley (K2) Marcoliusprime (K2) Milly (K2) Mufasa (K2) Strobilo (K2) TM4 (K2) ZoeJ (K2) Hurricane (K3) Keshu (K3) MacnCheese (K3) Pharb (K3) Pixie (K3) ShedlockHolmes (K3) TBond007 (K3) TribleTrouble (K3) Chancellor (K4) Cheetobro (K4) Eponine (K4) Fionnbharth (K4) JF1 (K4) Juliette (K4) Malthus (K4) MissDaisy (K4) Mitti (K4) OmniCritical (K4) Patt (K4) Reptar3000 (K4) Ruthiejr (K4) SamScheppers (K4) Slarp (K4) Taquito (K4) Wintermute (K4) Agent47 (K5) AlleyCat (K5) Collard (K5) Dadosky (K5) Edugator (K5) Feyre (K5) Gengar (K5) Guillsminger (K5) Heftyboy (K5) InvictusManeo (K5) Kratio (K5) Larva (K5) Leston (K5) Miryou (K5) OkiRoe (K5) Omnicron (K5) Paola (K5) Psycho (K5) Rando14 (K5) SoSeph (K5) Thyatira (K5) Waterfoul (K5) Amgine (K6) Amohnition (K6) Bryler (K6) Cain (K6) DarthP (K6) Ekdilam (K6) Ellie (K6) Fefferhead (K6) Hammy (K6) Krueger (K6) Marshawn (K6) PhelpsODU (K6) Phrank (K6) Shadow1 (K6) SirPhilip (K6) Sunflower1121 (K6) Syra333 (K6) TClif (K6) Tierra (K6) Unicorn (K6) Ximenita (K6) Yuna (K6) Aminay (K7) Boilgate (K8)
Annotating Institution	Culver-Stockton College
Annotation Status	In GenBank
Morphotype	Siphoviridae
Number of Genes	94
Number of tRNAs	0
Number of tmRNAs	0
Has been Phamerated?	Yes
Gene List	Click to View SamScheppers_1 SamScheppers_2 SamScheppers_3 SamScheppers_4 SamScheppers_5 SamScheppers_6 SamScheppers_7 (terminase) SamScheppers_8 (portal protein) SamScheppers_9 (MuF-like minor capsid protein) SamScheppers_10 SamScheppers_11 (scaffolding protein) SamScheppers_12 (major capsid protein) SamScheppers_13 (head-to-tail adaptor) SamScheppers_14 (head-to-tail stopper) SamScheppers_15 SamScheppers_16 (tail terminator) SamScheppers_17 (major tail protein) SamScheppers_18 (tail assembly chaperone) SamScheppers_19 (tail assembly chaperone) SamScheppers_20 (tape measure protein) SamScheppers_21 (minor tail protein) SamScheppers_22 (minor tail protein) SamScheppers_23 (minor tail protein) SamScheppers_24 (minor tail protein) SamScheppers_25 (minor tail protein) SamScheppers_26 (minor tail protein) SamScheppers_27 (minor tail protein) SamScheppers_28 SamScheppers_29 SamScheppers_30 SamScheppers_31 (lysin A) SamScheppers_32 (lysin B) SamScheppers_33 (holin) SamScheppers_34 SamScheppers_35 SamScheppers_36 SamScheppers_37 SamScheppers_38 SamScheppers_39 SamScheppers_40 SamScheppers_41 SamScheppers_42 SamScheppers_43 SamScheppers_44 (tyrosine integrase) SamScheppers_45 SamScheppers_46 (immunity repressor) SamScheppers_47 SamScheppers_48 SamScheppers_49 SamScheppers_50 SamScheppers_51 SamScheppers_52 SamScheppers_53 SamScheppers_54 SamScheppers_55 SamScheppers_56 SamScheppers_57 SamScheppers_58 SamScheppers_59 SamScheppers_60 SamScheppers_61 SamScheppers_62 (Cas4 family exonuclease) SamScheppers_63 SamScheppers_64 SamScheppers_65 SamScheppers_66 SamScheppers_67 SamScheppers_68 SamScheppers_69 (methyltransferase) SamScheppers_70 SamScheppers_71 SamScheppers_72 (DNA primase) SamScheppers_73 SamScheppers_74 SamScheppers_75 (HNH endonuclease) SamScheppers_76 SamScheppers_77 SamScheppers_78 SamScheppers_79 SamScheppers_80 (SprT-like protease) SamScheppers_81 SamScheppers_82 SamScheppers_83 SamScheppers_84 SamScheppers_85 SamScheppers_86 SamScheppers_87 SamScheppers_88 SamScheppers_89 SamScheppers_90 SamScheppers_91 SamScheppers_92 SamScheppers_93 (HNH endonuclease) SamScheppers_94 (methyltransferase)
Submitted Annotation in DNA Master Format	Download
Submitted Minimal DNA Master File	Download
Author List	Download
Annotation Cover Sheet	Download
Publication Info
Uploaded to GenBank?	Yes
GenBank Accession	MH051258
Refseq Number	None yet
Published in Paper	Pope, Bowman, Russell, et al 2015, eLIFE: Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
Archiving Info
Archiving status	Archived
Pitt Freezer Box#	3
Pitt Freezer Box Grid#	H8
Available Files
Plaque Picture	Download
EM Picture	Download
GenBank File for Phamerator	Download

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