Discovery Information |
Isolation Host | Mycobacterium smegmatis mc²155 |
Former names | Slimphagie |
Found By | Amara Ejikemeuwa and Bayla Bessemer |
Year Found | 2015 |
Location Found | Pensacola, FL USA |
Finding Institution | University of West Florida |
Program | Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science |
From enriched soil sample? | Unknown |
Isolation Temperature | Not entered |
GPS Coordinates | 30.551611 N, 87.218594 W Map |
Discovery Notes | The soil was collected from the Camellia Garden at the University of West Florida. |
Naming Notes | The phage was named after the rapper, Slim Shady (also known as Eminem). |
Sequencing Information |
Sequencing Complete? | Yes |
Date Sequencing Completed | Dec 7, 2015 |
Sequencing Facility | Pittsburgh Bacteriophage Institute |
Shotgun Sequencing Method | Illumina |
Approximate Shotgun Coverage | 2516 |
Genome length (bp) | 60143 |
Character of genome ends | 3' Sticky Overhang |
Overhang Length | 11 bases |
Overhang Sequence | CTCGTAGGCAT |
GC Content | 66.6% |
Fasta file available? | Yes: Download fasta file |
Characterization |
Cluster | K |
Subcluster | K1 |
Cluster Life Cycle | Temperate |
Other Cluster Members |
|
Annotating Institution | Unknown or unassigned |
Annotation Status | In GenBank |
Plaque Notes | The plaques were small, circular, and lytic. |
Morphotype | Siphoviridae |
Number of Genes | 98 |
Number of tRNAs | 1 |
Number of tmRNAs | 0 |
Has been Phamerated? | Yes |
Gene List |
|
Submitted Annotation in DNA Master Format | Download |
Submitted Minimal DNA Master File | Download |
Author List | Download |
Annotation Cover Sheet | Download |
Publication Info |
Uploaded to GenBank? | Yes |
GenBank Accession | MF140428 |
Refseq Number | None yet |
Published in Paper | Anders et al. 2017, Genome Announcements: Genome Sequences of Mycobacteriophages Amgine, Amohnition, Bella96, Cain, DarthP, Hammy, Krueger, LastHope, Peanam, PhelpsODU, Phrank, SirPhilip, Slimphazie, and Unicorn |
Archiving Info |
Archiving status |
Archived |
Pitt Freezer Box# |
18 |
Pitt Freezer Box Grid# |
C6 |
Available Files |
Plaque Picture | Download |
EM Picture | Download |
Final DNAMaster File | Download |
GenBank File for Phamerator | Download |