Mycobacterium phage ViviJ
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Detailed Information for Phage ViviJ
Discovery Information
Isolation HostMycobacterium smegmatis mc²155
Found ByKynara Jenkins
Year Found2024
Location FoundRichmond, VA United States
Finding InstitutionVirginia Commonwealth University
ProgramScience Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science
From enriched soil sample?Yes
Isolation Temperature37°C
GPS Coordinates37.5354 N, 77.44439 W Map
Discovery NotesTested the original sample twice, the first time the spot test was negative. On the second test, there was a positive spot test. This is where I finished my research with ViviJ
Naming NotesNamed after my birthday and family name.
Sequencing Information
Sequencing Complete?Yes
Date Sequencing CompletedJan 10, 2025
Sequencing FacilityPittsburgh Bacteriophage Institute
Shotgun Sequencing MethodIllumina
Sequencer UsedIllumina NextSeq 1000
Read TypeSingle-end reads
Read Length100 bp
Approximate Shotgun Coverage2668
Genome length (bp)63484
Character of genome ends3' Sticky Overhang
Overhang Length11 bases
Overhang SequenceCTCAGTGGCAT
GC Content65.5%
Fasta file available?Yes: Download fasta file
Characterization
ClusterK
SubclusterK5
Cluster Life CycleTemperate
Other Cluster Members

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ActinUp (K1)

Adephagia (K1)

Adonis (K1)

Ageofdapage (K1)

AlishaPH (K1)

Amelie (K1)

Anaya (K1)

Angelica (K1)

Apocalypse (K1)

Asayake (K1)

Atiba (K1)

BaghaKamala (K1)

BarrelRoll (K1)

BEEST (K1)

Beezoo (K1)

Bella96 (K1)

Belladonna (K1)

Bern (K1)

BGlluviae (K1)

Biglebops (K1)

Blizzard (K1)

Boiiii (K1)

CallaLilly (K1)

Capricorn (K1)

CaseJules (K1)

Chavito (K1)

CheetoDust (K1)

Chris (K1)

Clipper (K1)

CREW (K1)

CrimD (K1)

Curiosium (K1)

Dalmuri (K1)

Dartin (K1)

Deby (K1)

Devera (K1)

Dole (K1)

DrHayes (K1)

Durfee (K1)

Efra2 (K1)

Emerson (K1)

Enkosi (K1)

Ganymede (K1)

Geraldini (K1)

Guanica15 (K1)

HedwigODU (K1)

Homura (K1)

Hyperbowlee (K1)

Illumine (K1)

Inky (K1)

Jarvi (K1)

JAWS (K1)

Jayhawk (K1)

Jeckyll (K1)

Joy99 (K1)

KiSi (K1)

LastHope (K1)

LaterM (K1)

LeMond (K1)

LilPharaoh (K1)

LindNT (K1)

Llorens (K1)

Lunahalos (K1)

MacKat (K1)

MarkPhew (K1)

McMater (K1)

Mdavu (K1)

MeaningOfLife (K1)

Megsy (K1)

Murucutumbu (K1)

Mynx (K1)

Nibb (K1)

Nikao (K1)

Niklas (K1)

Nutello (K1)

Oscar (K1)

Padfoot (K1)

Padpat (K1)

Peanam (K1)

Peel (K1)

Piatt (K1)

Pisa4 (K1)

Pokerus (K1)

Prithvi (K1)

QuincyRose (K1)

Ramen (K1)

Rapunzel97 (K1)

Richo (K1)

Rosmarinus (K1)

SamuelLPlaqson (K1)

Scarlett (K1)

SgtBeansprout (K1)

Shaobing (K1)

ShiaSurprise (K1)

Slimphazie (K1)

Spock (K1)

Stinson (K1)

Sulley (K1)

Tachez (K1)

TaiwanKao (K1)

Teejan (K1)

TingHuaYa (K1)

TiniBug (K1)

Tiri (K1)

Topper (K1)

Torres (K1)

TreyKay (K1)

Trice (K1)

TruffulaTree (K1)

Twitch (K1)

Urkel (K1)

Validus (K1)

Veliki (K1)

YoureAdopted (K1)

Yunkel11 (K1)

Zabiza (K1)

Zavala (K1)

BoostSeason (K2)

DismalFunk (K2)

DismalStressor (K2)

Doughnut (K2)

Findley (K2)

Marcoliusprime (K2)

Milly (K2)

Mufasa (K2)

Strobilo (K2)

TM4 (K2)

ZoeJ (K2)

Hurricane (K3)

Keshu (K3)

Lea83 (K3)

MacnCheese (K3)

Neighly (K3)

Pharb (K3)

Pixie (K3)

ShedlockHolmes (K3)

TBond007 (K3)

TribleTrouble (K3)

Bobquesha (K4)

Chancellor (K4)

Cheetobro (K4)

DanSyl44 (K4)

Eponine (K4)

Fionnbharth (K4)

JF1 (K4)

Juliette (K4)

Kraw (K4)

Lebo14 (K4)

Malthus (K4)

MissDaisy (K4)

Mitti (K4)

OmniCritical (K4)

Patt (K4)

Reptar3000 (K4)

Ruthiejr (K4)

SamScheppers (K4)

Slarp (K4)

Taquito (K4)

Wintermute (K4)

YasnayaPolyana (K4)

Agent47 (K5)

AlleyCat (K5)

Collard (K5)

Dadosky (K5)

Edugator (K5)

Feyre (K5)

Gengar (K5)

Guillsminger (K5)

Heftyboy (K5)

InvictusManeo (K5)

Kratio (K5)

Larva (K5)

Leston (K5)

Miryou (K5)

OkiRoe (K5)

Omnicron (K5)

Paola (K5)

Psycho (K5)

Rando14 (K5)

SoSeph (K5)

Thyatira (K5)

ViviJ (K5)

Waterfoul (K5)

Amgine (K6)

Amohnition (K6)

Applecrisp (K6)

Bryler (K6)

Cain (K6)

DarthP (K6)

Ekdilam (K6)

Ellie (K6)

Fefferhead (K6)

Hammy (K6)

Krueger (K6)

Marshawn (K6)

November (K6)

PhelpsODU (K6)

Phrank (K6)

Shadow1 (K6)

SirPhilip (K6)

Sunflower1121 (K6)

Syra333 (K6)

TClif (K6)

Tierra (K6)

Unicorn (K6)

Ximenita (K6)

Yuna (K6)

Aminay (K7)

Boilgate (K8)

Annotating InstitutionVirginia Commonwealth University
Annotation StatusQC Complete
Plaque Notes1mm diameter, turbid center, cloudy halo
MorphotypeSiphoviridae
Number of Genes104
Number of tRNAs1
Number of tmRNAs0
Has been Phamerated?Yes
Gene List

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ViviJ_1

ViviJ_2

ViviJ_3 — tRNA
(tRNA-Trp(cca))

ViviJ_4

ViviJ_5
(terminase)

ViviJ_6
(portal protein)

ViviJ_7
(capsid maturation protease)

ViviJ_8

ViviJ_9
(scaffolding protein)

ViviJ_10
(major capsid protein)

ViviJ_11
(head-to-tail adaptor)

ViviJ_12
(head-to-tail stopper)

ViviJ_13

ViviJ_14
(tail terminator)

ViviJ_15
(major tail protein)

ViviJ_16
(tail assembly chaperone)

ViviJ_17
(tail assembly chaperone)

ViviJ_18
(tape measure protein)

ViviJ_19
(Dit)

ViviJ_20
(baseplate hub)

ViviJ_21

ViviJ_22
(minor tail protein)

ViviJ_23

ViviJ_24
(tail spike)

ViviJ_25

ViviJ_26
(minor tail protein)

ViviJ_27
(minor tail protein)

ViviJ_28
(lysin A)

ViviJ_29
(lysin B)

ViviJ_30
(holin)

ViviJ_31

ViviJ_32
(helix-turn-helix DNA binding domain)

ViviJ_33
(metallophosphatase)

ViviJ_34

ViviJ_35

ViviJ_36
(helix-turn-helix DNA binding domain)

ViviJ_37
(hydrolase)

ViviJ_38
(serine integrase)

ViviJ_39

ViviJ_40

ViviJ_41
(immunity repressor)

ViviJ_42
(helix-turn-helix DNA binding domain)

ViviJ_43

ViviJ_44

ViviJ_45

ViviJ_46

ViviJ_47

ViviJ_48

ViviJ_49

ViviJ_50

ViviJ_51

ViviJ_52

ViviJ_53

ViviJ_54
(Cas4 family exonuclease)

ViviJ_55

ViviJ_56

ViviJ_57

ViviJ_58

ViviJ_59
(NrdH-like glutaredoxin)

ViviJ_60
(HNH endonuclease)

ViviJ_61
(HNH endonuclease)

ViviJ_62
(DNA primase/polymerase/helicase)

ViviJ_63
(DNA helicase)

ViviJ_64
(Holliday junction resolvase)

ViviJ_65
(helix-turn-helix DNA binding domain)

ViviJ_66

ViviJ_67
(helix-turn-helix DNA binding domain)

ViviJ_68

ViviJ_69

ViviJ_70

ViviJ_71

ViviJ_72

ViviJ_73

ViviJ_74

ViviJ_75
(helix-turn-helix DNA binding domain)

ViviJ_76

ViviJ_77

ViviJ_78

ViviJ_79

ViviJ_80

ViviJ_81

ViviJ_82
(RNA ligase)

ViviJ_83
(ASCE ATPase)

ViviJ_84

ViviJ_85

ViviJ_86

ViviJ_87

ViviJ_88

ViviJ_89

ViviJ_90

ViviJ_91

ViviJ_92
(dpdA-like tRNA-guanine transglycosylase)

ViviJ_93
(toxin in toxin/antitoxin system, BrnT-like)

ViviJ_94
(antitoxin in toxin/antitoxin system, BrnA-like)

ViviJ_95

ViviJ_96

ViviJ_97

ViviJ_98

ViviJ_99

ViviJ_100

ViviJ_101

ViviJ_102

ViviJ_103

ViviJ_104

ViviJ_105
(HNH endonuclease)

Submitted Annotation in DNA Master FormatDownload
Submitted Minimal DNA Master FileDownload
Author ListDownload
Annotation Cover SheetDownload
Publication Info
Uploaded to GenBank?No
GenBank AccessionNone yet
Refseq NumberNone yet
Archiving Info
Archiving status Archived
SEA Lysate Titer 1.1X10^10
Pitt Freezer Box# 201
Pitt Freezer Box Grid# A4
Available Files
Plaque PictureDownload
EM PictureDownload
GenBank File for PhameratorDownload